script/python/ffi_types/copr.rs
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// Copyright 2023 Greptime Team
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
// http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.
pub mod compile;
pub mod parse;
use std::collections::HashMap;
use std::result::Result as StdResult;
use std::sync::{Arc, Weak};
use common_query::OutputData;
use common_recordbatch::{RecordBatch, RecordBatches};
use datafusion_common::ScalarValue;
use datatypes::arrow::compute;
use datatypes::data_type::{ConcreteDataType, DataType};
use datatypes::prelude::Value;
use datatypes::schema::{ColumnSchema, Schema, SchemaRef};
use datatypes::vectors::{Helper, VectorRef};
// use crate::python::builtins::greptime_builtin;
use parse::DecoratorArgs;
#[cfg(feature = "pyo3_backend")]
use pyo3::pyclass as pyo3class;
use query::parser::QueryLanguageParser;
use query::QueryEngine;
use rustpython_compiler_core::CodeObject;
use rustpython_vm as vm;
#[cfg(test)]
use serde::Deserialize;
use session::context::{QueryContextBuilder, QueryContextRef};
use snafu::{OptionExt, ResultExt};
use vm::convert::ToPyObject;
use vm::{pyclass as rspyclass, PyObjectRef, PyPayload, PyResult, VirtualMachine};
use super::py_recordbatch::PyRecordBatch;
use crate::engine::EvalContext;
use crate::python::error::{
ensure, ArrowSnafu, DataFusionSnafu, OtherSnafu, Result, TypeCastSnafu,
};
use crate::python::ffi_types::PyVector;
#[cfg(feature = "pyo3_backend")]
use crate::python::pyo3::pyo3_exec_parsed;
use crate::python::rspython::rspy_exec_parsed;
#[cfg_attr(test, derive(Deserialize))]
#[derive(Debug, Clone, PartialEq, Eq)]
pub struct AnnotationInfo {
/// if None, use types inferred by PyVector
// TODO(yingwen): We should use our data type. i.e. ConcreteDataType.
pub datatype: Option<ConcreteDataType>,
pub is_nullable: bool,
}
#[cfg_attr(test, derive(Deserialize))]
#[derive(Debug, Default, Clone, Eq, PartialEq)]
pub enum BackendType {
#[default]
RustPython,
// TODO(discord9): intergral test
#[allow(unused)]
CPython,
}
pub type CoprocessorRef = Arc<Coprocessor>;
#[cfg_attr(test, derive(Deserialize))]
#[derive(Debug, Clone)]
pub struct Coprocessor {
pub name: String,
pub deco_args: DecoratorArgs,
/// get from python function args' annotation, first is type, second is is_nullable
pub arg_types: Vec<Option<AnnotationInfo>>,
/// get from python function returns' annotation, first is type, second is is_nullable
pub return_types: Vec<Option<AnnotationInfo>>,
/// kwargs in coprocessor function's signature
pub kwarg: Option<String>,
/// store its corresponding script, also skip serde when in `cfg(test)` to reduce work in compare
#[cfg_attr(test, serde(skip))]
pub script: String,
// We must use option here, because we use `serde` to deserialize coprocessor
// from ron file and `Deserialize` requires Coprocessor implementing `Default` trait,
// but CodeObject doesn't.
#[cfg_attr(test, serde(skip))]
pub code_obj: Option<CodeObject>,
#[cfg_attr(test, serde(skip))]
pub query_engine: Option<QueryEngineWeakRef>,
/// Use which backend to run this script
/// Ideally in test both backend should be tested, so skip this
#[cfg_attr(test, serde(skip))]
pub backend: BackendType,
}
#[derive(Clone)]
pub struct QueryEngineWeakRef(pub Weak<dyn QueryEngine>);
impl From<Weak<dyn QueryEngine>> for QueryEngineWeakRef {
fn from(value: Weak<dyn QueryEngine>) -> Self {
Self(value)
}
}
impl From<&Arc<dyn QueryEngine>> for QueryEngineWeakRef {
fn from(value: &Arc<dyn QueryEngine>) -> Self {
Self(Arc::downgrade(value))
}
}
impl std::fmt::Debug for QueryEngineWeakRef {
fn fmt(&self, f: &mut std::fmt::Formatter<'_>) -> std::fmt::Result {
f.debug_tuple("QueryEngineWeakRef")
.field(&self.0.upgrade().map(|f| f.name().to_string()))
.finish()
}
}
impl PartialEq for Coprocessor {
fn eq(&self, other: &Self) -> bool {
self.name == other.name
&& self.deco_args == other.deco_args
&& self.arg_types == other.arg_types
&& self.return_types == other.return_types
&& self.script == other.script
}
}
impl Eq for Coprocessor {}
impl Coprocessor {
/// generate [`Schema`] according to return names, types,
/// if no annotation
/// the datatypes of the actual columns is used directly
pub(crate) fn gen_schema(&self, cols: &[VectorRef]) -> Result<SchemaRef> {
let names = &self.deco_args.ret_names;
let anno = &self.return_types;
ensure!(
cols.len() == names.len() && names.len() == anno.len(),
OtherSnafu {
reason: format!(
"Unmatched length for cols({}), names({}) and annotation({})",
cols.len(),
names.len(),
anno.len()
)
}
);
let column_schemas = names
.iter()
.enumerate()
.map(|(idx, name)| {
let real_ty = cols[idx].data_type();
let AnnotationInfo {
datatype: ty,
is_nullable,
} = anno[idx].clone().unwrap_or_else(|| {
// default to be not nullable and use DataType inferred by PyVector itself
AnnotationInfo {
datatype: Some(real_ty.clone()),
is_nullable: false,
}
});
let column_type = match ty {
Some(anno_type) => anno_type,
// if type is like `_` or `_ | None`
None => real_ty,
};
Ok(ColumnSchema::new(name, column_type, is_nullable))
})
.collect::<Result<Vec<_>>>()?;
Ok(Arc::new(Schema::new(column_schemas)))
}
/// check if real types and annotation types(if have) is the same, if not try cast columns to annotated type
pub(crate) fn check_and_cast_type(&self, cols: &mut [VectorRef]) -> Result<()> {
for col in cols.iter_mut() {
if let ConcreteDataType::List(x) = col.data_type() {
let values =
ScalarValue::convert_array_to_scalar_vec(col.to_arrow_array().as_ref())
.context(DataFusionSnafu)?
.into_iter()
.flatten()
.map(Value::try_from)
.collect::<std::result::Result<Vec<_>, _>>()
.context(TypeCastSnafu)?;
let mut builder = x.item_type().create_mutable_vector(values.len());
for v in values.iter() {
builder.push_value_ref(v.as_value_ref());
}
*col = builder.to_vector();
}
}
let return_types = &self.return_types;
// allow ignore Return Type Annotation
if return_types.is_empty() {
return Ok(());
}
ensure!(
cols.len() == return_types.len(),
OtherSnafu {
reason: format!(
"The number of return Vector is wrong, expect {}, found {}",
return_types.len(),
cols.len()
)
}
);
for (col, anno) in cols.iter_mut().zip(return_types) {
if let Some(AnnotationInfo {
datatype: Some(datatype),
is_nullable: _,
}) = anno
{
let real_ty = col.data_type();
let anno_ty = datatype;
if real_ty != *anno_ty {
let array = col.to_arrow_array();
let array =
compute::cast(&array, &anno_ty.as_arrow_type()).context(ArrowSnafu)?;
*col = Helper::try_into_vector(array).context(TypeCastSnafu)?;
}
}
}
Ok(())
}
}
/// select columns according to `fetch_names` from `rb`
/// and cast them into a Vec of PyVector
pub(crate) fn select_from_rb(rb: &RecordBatch, fetch_names: &[String]) -> Result<Vec<PyVector>> {
fetch_names
.iter()
.map(|name| {
let vector = rb.column_by_name(name).with_context(|| OtherSnafu {
reason: format!("Can't find field name {name} in all columns in {rb:?}"),
})?;
Ok(PyVector::from(vector.clone()))
})
.collect()
}
/// match between arguments' real type and annotation types
/// if type anno is `vector[_]` then use real type(from RecordBatch's schema)
pub(crate) fn check_args_anno_real_type(
arg_names: &[String],
args: &[PyVector],
copr: &Coprocessor,
rb: &RecordBatch,
) -> Result<()> {
ensure!(
arg_names.len() == args.len(),
OtherSnafu {
reason: format!("arg_names:{arg_names:?} and args{args:?}'s length is different")
}
);
for (idx, arg) in args.iter().enumerate() {
let anno_ty = copr.arg_types[idx].clone();
let real_ty = arg.data_type();
let arg_name = arg_names[idx].clone();
let col_idx = rb.schema.column_index_by_name(&arg_name).ok_or_else(|| {
OtherSnafu {
reason: format!("Can't find column by name {arg_name}"),
}
.build()
})?;
let is_nullable: bool = rb.schema.column_schemas()[col_idx].is_nullable();
ensure!(
anno_ty
.clone()
.map(|v| v.datatype.is_none() // like a vector[_]
|| v.datatype == Some(real_ty.clone()) && v.is_nullable == is_nullable)
.unwrap_or(true),
OtherSnafu {
reason: format!(
"column {}'s Type annotation is {:?}, but actual type is {:?} with nullable=={}",
// It's safe to unwrap here, we already ensure the args and types number is the same when parsing
copr.deco_args.arg_names.as_ref().unwrap()[idx],
anno_ty,
real_ty,
is_nullable
)
}
)
}
Ok(())
}
/// The coprocessor function accept a python script and a Record Batch:
/// ## What it does
/// 1. it take a python script and a [`RecordBatch`], extract columns and annotation info according to `args` given in decorator in python script
/// 2. execute python code and return a vector or a tuple of vector,
/// 3. the returning vector(s) is assembled into a new [`RecordBatch`] according to `returns` in python decorator and return to caller
///
/// # Example
///
/// ```ignore
/// use std::sync::Arc;
/// use common_recordbatch::RecordBatch;
/// use datatypes::prelude::*;
/// use datatypes::schema::{ColumnSchema, Schema};
/// use datatypes::vectors::{Float32Vector, Float64Vector};
/// use common_function::scalars::python::exec_coprocessor;
/// let python_source = r#"
/// @copr(args=["cpu", "mem"], returns=["perf", "what"])
/// def a(cpu, mem):
/// return cpu + mem, cpu - mem
/// "#;
/// let cpu_array = Float32Vector::from_slice([0.9f32, 0.8, 0.7, 0.6]);
/// let mem_array = Float64Vector::from_slice([0.1f64, 0.2, 0.3, 0.4]);
/// let schema = Arc::new(Schema::new(vec![
/// ColumnSchema::new("cpu", ConcreteDataType::float32_datatype(), false),
/// ColumnSchema::new("mem", ConcreteDataType::float64_datatype(), false),
/// ]));
/// let rb =
/// RecordBatch::new(schema, vec![Arc::new(cpu_array), Arc::new(mem_array)]).unwrap();
/// let ret = exec_coprocessor(python_source, &rb).unwrap();
/// assert_eq!(ret.column(0).len(), 4);
/// ```
///
/// # Type Annotation
/// you can use type annotations in args and returns to designate types, so coprocessor will check for corresponding types.
///
/// Currently support types are `u8`, `u16`, `u32`, `u64`, `i8`, `i16`, `i32`, `i64` and `f16`, `f32`, `f64`
///
/// use `f64 | None` to mark if returning column is nullable like in [`RecordBatch`]'s schema's [`ColumnSchema`]'s is_nullable
///
/// you can also use single underscore `_` to let coprocessor infer what type it is, so `_` and `_ | None` are both valid in type annotation.
/// Note: using `_` means not nullable column, using `_ | None` means nullable column
///
/// a example (of python script) given below:
/// ```python
/// @copr(args=["cpu", "mem"], returns=["perf", "minus", "mul", "div"])
/// def a(cpu: vector[f32], mem: vector[f64])->(vector[f64|None], vector[f64], vector[_], vector[_ | None]):
/// return cpu + mem, cpu - mem, cpu * mem, cpu / mem
/// ```
///
/// # Return Constant columns
/// You can return constant in python code like `return 1, 1.0, True`
/// which create a constant array(with same value)(currently support int, float and bool) as column on return
#[cfg(test)]
pub fn exec_coprocessor(
script: &str,
rb: &Option<RecordBatch>,
eval_ctx: &EvalContext,
) -> Result<RecordBatch> {
// 1. parse the script and check if it's only a function with `@coprocessor` decorator, and get `args` and `returns`,
// 2. also check for exist of `args` in `rb`, if not found, return error
// cache the result of parse_copr
let copr = parse::parse_and_compile_copr(script, None)?;
exec_parsed(&copr, rb, &HashMap::new(), eval_ctx)
}
#[cfg_attr(feature = "pyo3_backend", pyo3class(name = "query_engine"))]
#[rspyclass(module = false, name = "query_engine")]
#[derive(Debug, PyPayload, Clone)]
pub struct PyQueryEngine {
inner: QueryEngineWeakRef,
query_ctx: QueryContextRef,
}
pub(crate) enum Either {
Rb(RecordBatches),
AffectedRows(usize),
}
impl PyQueryEngine {
pub(crate) fn sql_to_rb(&self, sql: String) -> StdResult<RecordBatch, String> {
let res = self.query_with_new_thread(sql.clone())?;
match res {
Either::Rb(rbs) => {
let rb = compute::concat_batches(
rbs.schema().arrow_schema(),
rbs.iter().map(|r| r.df_record_batch()),
)
.map_err(|e| format!("Concat batches failed for query {sql}: {e}"))?;
RecordBatch::try_from_df_record_batch(rbs.schema(), rb)
.map_err(|e| format!("Convert datafusion record batch to record batch failed for query {sql}: {e}"))
}
Either::AffectedRows(_) => Err(format!("Expect actual results from query {sql}")),
}
}
}
#[rspyclass]
impl PyQueryEngine {
pub(crate) fn from_weakref(inner: QueryEngineWeakRef, query_ctx: QueryContextRef) -> Self {
Self { inner, query_ctx }
}
pub(crate) fn query_with_new_thread(&self, s: String) -> StdResult<Either, String> {
let query = self.inner.0.upgrade();
let query_ctx = self.query_ctx.clone();
let thread_handle = std::thread::spawn(move || -> std::result::Result<_, String> {
if let Some(engine) = query {
let stmt =
QueryLanguageParser::parse_sql(&s, &query_ctx).map_err(|e| e.to_string())?;
// To prevent the error of nested creating Runtime, if is nested, use the parent runtime instead
let rt = tokio::runtime::Runtime::new().map_err(|e| e.to_string())?;
let handle = rt.handle().clone();
let res = handle.block_on(async {
let ctx = Arc::new(QueryContextBuilder::default().build());
let plan = engine
.planner()
.plan(&stmt, ctx.clone())
.await
.map_err(|e| e.to_string())?;
let res = engine
.clone()
.execute(plan, ctx)
.await
.map_err(|e| e.to_string());
match res {
Ok(o) => match o.data {
OutputData::AffectedRows(cnt) => Ok(Either::AffectedRows(cnt)),
OutputData::RecordBatches(rbs) => Ok(Either::Rb(rbs)),
OutputData::Stream(s) => Ok(Either::Rb(
common_recordbatch::util::collect_batches(s).await.unwrap(),
)),
},
Err(e) => Err(e),
}
})?;
Ok(res)
} else {
Err("Query Engine is already dropped".to_string())
}
});
thread_handle
.join()
.map_err(|e| format!("Dedicated thread for sql query panic: {e:?}"))?
}
// TODO(discord9): find a better way to call sql query api, now we don't if we are in async context or not
/// - return sql query results in `PyRecordBatch`, or
/// - a empty `PyDict` if query results is empty
/// - or number of AffectedRows
#[pymethod]
fn sql(&self, s: String, vm: &VirtualMachine) -> PyResult<PyObjectRef> {
self.query_with_new_thread(s)
.map_err(|e| vm.new_system_error(e))
.map(|rbs| match rbs {
Either::Rb(rbs) => {
let rb = compute::concat_batches(
rbs.schema().arrow_schema(),
rbs.iter().map(|rb| rb.df_record_batch()),
)
.map_err(|e| {
vm.new_runtime_error(format!("Failed to concat batches: {e:#?}"))
})?;
let rb =
RecordBatch::try_from_df_record_batch(rbs.schema(), rb).map_err(|e| {
vm.new_runtime_error(format!("Failed to cast recordbatch: {e:#?}"))
})?;
let rb = PyRecordBatch::new(rb);
Ok(rb.to_pyobject(vm))
}
Either::AffectedRows(cnt) => Ok(vm.ctx.new_int(cnt).to_pyobject(vm)),
})?
}
}
/// using a parsed `Coprocessor` struct as input to execute python code
pub fn exec_parsed(
copr: &Coprocessor,
rb: &Option<RecordBatch>,
params: &HashMap<String, String>,
eval_ctx: &EvalContext,
) -> Result<RecordBatch> {
match copr.backend {
BackendType::RustPython => rspy_exec_parsed(copr, rb, params, eval_ctx),
BackendType::CPython => {
#[cfg(feature = "pyo3_backend")]
{
pyo3_exec_parsed(copr, rb, params, eval_ctx)
}
#[cfg(not(feature = "pyo3_backend"))]
{
OtherSnafu {
reason: "`pyo3` feature is disabled, therefore can't run scripts in cpython"
.to_string(),
}
.fail()
}
}
}
}
#[cfg(test)]
mod tests {
use crate::python::ffi_types::copr::parse::parse_and_compile_copr;
#[test]
fn test_parse_copr() {
let script = r#"
def add(a, b):
return a + b
@copr(args=["a", "b", "c"], returns = ["r"], sql="select number as a,number as b,number as c from numbers limit 100")
def test(a, b, c, **params):
import greptime as g
return ( a + b ) / g.sqrt(c)
"#;
let copr = parse_and_compile_copr(script, None).unwrap();
assert_eq!(copr.name, "test");
let deco_args = copr.deco_args.clone();
assert_eq!(
deco_args.sql.unwrap(),
"select number as a,number as b,number as c from numbers limit 100"
);
assert_eq!(deco_args.ret_names, vec!["r"]);
assert_eq!(deco_args.arg_names.unwrap(), vec!["a", "b", "c"]);
assert_eq!(copr.arg_types, vec![None, None, None]);
assert_eq!(copr.return_types, vec![None]);
assert_eq!(copr.kwarg, Some("params".to_string()));
assert_eq!(copr.script, script);
let _ = copr.code_obj.unwrap();
}
}